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1

The Collaboratory for MS3D: A New Cyberinfrastructure for the Structural Elucidation of Biological Macromolecules and Their Assemblies Using Mass Spectrometry-Based Approaches

Yu, Eizadora T., Hawkins, Arie, Kuntz, Irwin D., Rahn, Larry A., Rothfuss, Andrew, Sale, Kenneth, Young, Malin M., Yang, Christine L., Pancerella, Carmen M., Fabris, Daniele

Journal:

Journal of Proteome Research

Year:

2008

Language:

english

File:

PDF, 5.43 MB

english, 2008

2

Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D

Daniele Fabris, Eizadora T. Yu

Journal:

Journal of Mass Spectrometry

Year:

2010

Language:

english

File:

PDF, 538 KB

english, 2010

3

Mass spectrometric investigation of protein alkylation by the RNA footprinting probe kethoxal

Olusimidele T. Akinsiku, Eizadora T. Yu, Daniele Fabris

Journal:

Journal of Mass Spectrometry

Year:

2005

Language:

english

File:

PDF, 236 KB

english, 2005

4

Toward multiplexing the application of solvent accessibility probes for the investigation of RNA three-dimensional structures by electrospray ionization–Fourier transform mass spectrometry

Eizadora Yu, Daniele Fabris

Journal:

Analytical Biochemistry

Year:

2004

Language:

english

File:

PDF, 680 KB

english, 2004

5

Atmospheric pressure MALDI-FTMS of normal and chemically modified RNA

Katherine A. Kellersberger, Eizadora T. Yu, Samuel I. Merenbloom, Daniele Fabris

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2005

Language:

english

File:

PDF, 270 KB

english, 2005

6

Toward Building a Database of Bifunctional Probes for the MS3D Investigation of Nucleic Acids Structures

Qingrong Zhang, Eizadora T. Yu, Katherine A. Kellersberger, Elizabeth Crosland, Daniele Fabris

Journal:

Journal of the American Society for Mass Spectrometry

Year:

2006

Language:

english

File:

PDF, 1.23 MB

english, 2006

7

Triacylglycerol accumulation and profiling in the model diatomsThalassiosira pseudonanaandPhaeodactylum tricornutum(Baccilariophyceae) during starvation

Eizadora T. Yu, Frank J. Zendejas, Pamela D. Lane, Sara Gaucher, Blake A. Simmons, Todd W. Lane

Journal:

Journal of Applied Phycology

Year:

2009

Language:

english

File:

PDF, 366 KB

english, 2009

8

Sequence Variation in the Ribosomal DNA Internal Transcribed Spacer ofTridacna crocea

Yu, Eizadora T., Juinio-Me&#x000F1, ez, Ma. Antonette, Monje, Virginia D.

Journal:

Marine Biotechnology

Year:

2000

Language:

english

File:

PDF, 641 KB

english, 2000

9

Untying the FIV Frameshifting Pseudoknot Structure by MS3D

Eizadora T. Yu, Qingrong Zhang, Daniele Fabris

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 777 KB

english, 2005

10

Bioinformatic processing to identify single nucleotide polymorphism that potentially affect Ape1 function

Eizadora T. Yu, Masood Z. Hadi

Journal:

Mutation Research/Genetic Toxicology and Environmental Mutagenesis

Year:

2011

Language:

english

File:

PDF, 419 KB

english, 2011

11

Direct Probing of RNA Structures and RNA–Protein Interactions in the HIV-1 Packaging Signal by Chemical Modification and Electrospray Ionization Fourier Transform Mass Spectrometry

Eizadora Yu, Daniele Fabris

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 542 KB

english, 2003

12

Probing Conformational Changes in Ape1 during the Progression of Base Excision Repair

Yu, Eizadora, Gaucher, Sara P., Hadi, Masood Z.

Journal:

Year:

2010

Language:

english

File:

PDF, 2.34 MB

english, 2010

13

Modulation of E.Coli Dihydrofolate Reductase (DHFR) Activity by Site-Directed Chemical Cross-Linking (SDXL) of the M20 and FG Loops

Turner, Kevin, Elmer, Sidney, Light, Yooli, Yu, Eizadora, Highley, Aaron, Nguyen, Krystie, Sasaki, Darryl, Sale, Ken, Schoeniger, Joseph

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 49 KB

english, 2013

14

Top-Down Characterization of Nucleic Acids Modified by Structural Probes Using High-Resolution Tandem Mass Spectrometry and Automated Data Interpretation

Kellersberger, Katherine A., Yu, Eizadora, Kruppa, Gary H., Young, Malin M., Fabris, Daniele

Journal:

Analytical Chemistry

Year:

2004

Language:

english

File:

PDF, 134 KB

english, 2004

15

Longitudinal Analysis of Microbiota in MicroalgaNannochloropsis salinaCultures

Geng, Haifeng, Sale, Kenneth L., Tran-Gyamfi, Mary Bao, Lane, Todd W., Yu, Eizadora T.

Journal:

Microbial Ecology

Year:

2016

Language:

english

File:

PDF, 1.56 MB

english, 2016

16

Changes in the Structure of the Microbial Community Associated with Nannochloropsis salina following Treatments with Antibiotics and Bioactive Compounds

Geng, Haifeng, Tran-Gyamfi, Mary B., Lane, Todd W., Sale, Kenneth L., Yu, Eizadora T.

Journal:

Frontiers in Microbiology

Year:

2016

Language:

english

File:

PDF, 4.13 MB

english, 2016

17

Conomarphins cause paralysis in mollusk: Critical and tunable structural elements for bioactivity

Mendoza, Charmaine B., Masacupan, Dan Jethro M., Batoctoy, Dessa Camille R., Yu, Eizadora T., Lluisma, Arturo O., Salvador‐Reyes, Lilibeth A.

Journal:

Journal of Peptide Science

Year:

2019

Language:

english

File:

PDF, 1.37 MB

english, 2019

18

Ligand-Induced Conformational Dynamics of A Tyramine Receptor from Sitophilus oryzae

Braza, Mac Kevin E., Gazmen, Jerrica Dominique N., Yu, Eizadora T., Nellas, Ricky B.

Journal:

Scientific Reports

Year:

2019

Language:

english

File:

PDF, 6.02 MB

english, 2019

19

Ligand-Induced Conformational Dynamics of A Tyramine Receptor from Sitophilus oryzae

Braza, Mac Kevin E., Gazmen, Jerrica Dominique N., Yu, Eizadora T., Nellas, Ricky B.

Journal:

Scientific Reports

Year:

2019

File:

PDF, 6.02 MB

2019

20

Identification of Conomarphin Variants in the Conus eburneus Venom and the Effect of Sequence and PTM Variations on Conomarphin Conformations

Itang, Corazon Ericka Mae M., Gaza, Jokent T., Masacupan, Dan Jethro M., Batoctoy, Dessa Camille R., Chen, Yu-Ju, Nellas, Ricky B., Yu, Eizadora T.

Journal:

Year:

2020

File:

PDF, 5.29 MB

2020